At this time, nearing the end of Legion, we have covered all the mounts obtainable through reputation (that I’m aware of), aside from the basic Horde/Alliance faction mounts, in which case one just has to be Exalted with each Horde/Alliance faction (Orgrimmar, Thunder Bluff, Stormwind, Ironforge, etc.).
There’ll be more mounts to come in Battle for Azeroth, so in the meantime, here’s a quick list of the applicable reputations covered up to this point. Note that although some reputations award both mounts and pets, I tried to focus on the mounts.
The Burning Crusade
Wrath of the Lich King